1x minimal essential medium nonessential amino acids (mem neaa Search Results


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a) GSEA of Stag3 KD RNA-seq data reveals a negative normalised enrichment score of -1.50 (adj p= 0.044) for the Spermatogenesis signature (see Methods). b) Relative mRNA expression of PGC regulators in siLuc and siStag3 mESCs. Data is shown as fold-change from UT and is from 9 independent biological replicates. Quantifications and statistical analysis as before. c) Representative brightfield (top row), epi-fluorescent (middle row) and FACS profiles of PRDM1-GFP mESCs at select timepoints during in vitro differentiation into PGCLCs. Scale bar is 200um. d) Relative mRNA expression of select mESC ( Nanog), EpiLC ( Dnmt3b ), <t>PGCLC</t> ( Prdm1, Dppa3 ) and cohesin ( Stag1, 2, 3 and Smc1b ) genes from various timepoints during PGCLC differentiation in vitro . EB GFP+ cells were FACS sorted at the timepoints shown and collected for qRT-PCR. Gene expression is relative to levels in mESCs. Data is from 3 independent biological replicates. e) (Top) Representative brightfield and epi-fluorescent images of DPPA3-GFP mESCs treated with siLuc or siStag3 at three timepoints of embryoid body (EB) differentiation. (Bottom) Representative FACS profile of DPPA3-GFP d6 EB treated with siLuc or siStag3. Scale bar is 200μm. f) Left, quantification of DPPA3-GFP GeoMean or right, the % of DPPA3-GFP+ cells assessed by FACS (relative to UT mESCs) at different stages of PGCLC differentiation and upon siRNA treatment. Data is from 4 independent biological replicates. Quantifications and statistical analysis as before. g) Relative mRNA expression of select genes in mESCs or d6 EB GFP+ cells in siLuc and siStag3 conditions. Data is shown as fold-change from UT and is from 3 independent biological replicates. Quantifications and statistical analysis as above.
Primordial Germ Cell Like Cell Pgclc Media, supplied by Proteintech, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Corning Life Sciences mem non-essential amino acid (neaa)
a) GSEA of Stag3 KD RNA-seq data reveals a negative normalised enrichment score of -1.50 (adj p= 0.044) for the Spermatogenesis signature (see Methods). b) Relative mRNA expression of PGC regulators in siLuc and siStag3 mESCs. Data is shown as fold-change from UT and is from 9 independent biological replicates. Quantifications and statistical analysis as before. c) Representative brightfield (top row), epi-fluorescent (middle row) and FACS profiles of PRDM1-GFP mESCs at select timepoints during in vitro differentiation into PGCLCs. Scale bar is 200um. d) Relative mRNA expression of select mESC ( Nanog), EpiLC ( Dnmt3b ), <t>PGCLC</t> ( Prdm1, Dppa3 ) and cohesin ( Stag1, 2, 3 and Smc1b ) genes from various timepoints during PGCLC differentiation in vitro . EB GFP+ cells were FACS sorted at the timepoints shown and collected for qRT-PCR. Gene expression is relative to levels in mESCs. Data is from 3 independent biological replicates. e) (Top) Representative brightfield and epi-fluorescent images of DPPA3-GFP mESCs treated with siLuc or siStag3 at three timepoints of embryoid body (EB) differentiation. (Bottom) Representative FACS profile of DPPA3-GFP d6 EB treated with siLuc or siStag3. Scale bar is 200μm. f) Left, quantification of DPPA3-GFP GeoMean or right, the % of DPPA3-GFP+ cells assessed by FACS (relative to UT mESCs) at different stages of PGCLC differentiation and upon siRNA treatment. Data is from 4 independent biological replicates. Quantifications and statistical analysis as before. g) Relative mRNA expression of select genes in mESCs or d6 EB GFP+ cells in siLuc and siStag3 conditions. Data is shown as fold-change from UT and is from 3 independent biological replicates. Quantifications and statistical analysis as above.
Mem Non Essential Amino Acid (Neaa), supplied by Corning Life Sciences, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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a) GSEA of Stag3 KD RNA-seq data reveals a negative normalised enrichment score of -1.50 (adj p= 0.044) for the Spermatogenesis signature (see Methods). b) Relative mRNA expression of PGC regulators in siLuc and siStag3 mESCs. Data is shown as fold-change from UT and is from 9 independent biological replicates. Quantifications and statistical analysis as before. c) Representative brightfield (top row), epi-fluorescent (middle row) and FACS profiles of PRDM1-GFP mESCs at select timepoints during in vitro differentiation into PGCLCs. Scale bar is 200um. d) Relative mRNA expression of select mESC ( Nanog), EpiLC ( Dnmt3b ), <t>PGCLC</t> ( Prdm1, Dppa3 ) and cohesin ( Stag1, 2, 3 and Smc1b ) genes from various timepoints during PGCLC differentiation in vitro . EB GFP+ cells were FACS sorted at the timepoints shown and collected for qRT-PCR. Gene expression is relative to levels in mESCs. Data is from 3 independent biological replicates. e) (Top) Representative brightfield and epi-fluorescent images of DPPA3-GFP mESCs treated with siLuc or siStag3 at three timepoints of embryoid body (EB) differentiation. (Bottom) Representative FACS profile of DPPA3-GFP d6 EB treated with siLuc or siStag3. Scale bar is 200μm. f) Left, quantification of DPPA3-GFP GeoMean or right, the % of DPPA3-GFP+ cells assessed by FACS (relative to UT mESCs) at different stages of PGCLC differentiation and upon siRNA treatment. Data is from 4 independent biological replicates. Quantifications and statistical analysis as before. g) Relative mRNA expression of select genes in mESCs or d6 EB GFP+ cells in siLuc and siStag3 conditions. Data is shown as fold-change from UT and is from 3 independent biological replicates. Quantifications and statistical analysis as above.
Non Essential Amino Acids, supplied by Biochrom, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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FUJIFILM non-essential amino acids (neaa
a) GSEA of Stag3 KD RNA-seq data reveals a negative normalised enrichment score of -1.50 (adj p= 0.044) for the Spermatogenesis signature (see Methods). b) Relative mRNA expression of PGC regulators in siLuc and siStag3 mESCs. Data is shown as fold-change from UT and is from 9 independent biological replicates. Quantifications and statistical analysis as before. c) Representative brightfield (top row), epi-fluorescent (middle row) and FACS profiles of PRDM1-GFP mESCs at select timepoints during in vitro differentiation into PGCLCs. Scale bar is 200um. d) Relative mRNA expression of select mESC ( Nanog), EpiLC ( Dnmt3b ), <t>PGCLC</t> ( Prdm1, Dppa3 ) and cohesin ( Stag1, 2, 3 and Smc1b ) genes from various timepoints during PGCLC differentiation in vitro . EB GFP+ cells were FACS sorted at the timepoints shown and collected for qRT-PCR. Gene expression is relative to levels in mESCs. Data is from 3 independent biological replicates. e) (Top) Representative brightfield and epi-fluorescent images of DPPA3-GFP mESCs treated with siLuc or siStag3 at three timepoints of embryoid body (EB) differentiation. (Bottom) Representative FACS profile of DPPA3-GFP d6 EB treated with siLuc or siStag3. Scale bar is 200μm. f) Left, quantification of DPPA3-GFP GeoMean or right, the % of DPPA3-GFP+ cells assessed by FACS (relative to UT mESCs) at different stages of PGCLC differentiation and upon siRNA treatment. Data is from 4 independent biological replicates. Quantifications and statistical analysis as before. g) Relative mRNA expression of select genes in mESCs or d6 EB GFP+ cells in siLuc and siStag3 conditions. Data is shown as fold-change from UT and is from 3 independent biological replicates. Quantifications and statistical analysis as above.
Non Essential Amino Acids (Neaa, supplied by FUJIFILM, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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PeproTech hgf
a) GSEA of Stag3 KD RNA-seq data reveals a negative normalised enrichment score of -1.50 (adj p= 0.044) for the Spermatogenesis signature (see Methods). b) Relative mRNA expression of PGC regulators in siLuc and siStag3 mESCs. Data is shown as fold-change from UT and is from 9 independent biological replicates. Quantifications and statistical analysis as before. c) Representative brightfield (top row), epi-fluorescent (middle row) and FACS profiles of PRDM1-GFP mESCs at select timepoints during in vitro differentiation into PGCLCs. Scale bar is 200um. d) Relative mRNA expression of select mESC ( Nanog), EpiLC ( Dnmt3b ), <t>PGCLC</t> ( Prdm1, Dppa3 ) and cohesin ( Stag1, 2, 3 and Smc1b ) genes from various timepoints during PGCLC differentiation in vitro . EB GFP+ cells were FACS sorted at the timepoints shown and collected for qRT-PCR. Gene expression is relative to levels in mESCs. Data is from 3 independent biological replicates. e) (Top) Representative brightfield and epi-fluorescent images of DPPA3-GFP mESCs treated with siLuc or siStag3 at three timepoints of embryoid body (EB) differentiation. (Bottom) Representative FACS profile of DPPA3-GFP d6 EB treated with siLuc or siStag3. Scale bar is 200μm. f) Left, quantification of DPPA3-GFP GeoMean or right, the % of DPPA3-GFP+ cells assessed by FACS (relative to UT mESCs) at different stages of PGCLC differentiation and upon siRNA treatment. Data is from 4 independent biological replicates. Quantifications and statistical analysis as before. g) Relative mRNA expression of select genes in mESCs or d6 EB GFP+ cells in siLuc and siStag3 conditions. Data is shown as fold-change from UT and is from 3 independent biological replicates. Quantifications and statistical analysis as above.
Hgf, supplied by PeproTech, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Thermo Fisher medium
a) GSEA of Stag3 KD RNA-seq data reveals a negative normalised enrichment score of -1.50 (adj p= 0.044) for the Spermatogenesis signature (see Methods). b) Relative mRNA expression of PGC regulators in siLuc and siStag3 mESCs. Data is shown as fold-change from UT and is from 9 independent biological replicates. Quantifications and statistical analysis as before. c) Representative brightfield (top row), epi-fluorescent (middle row) and FACS profiles of PRDM1-GFP mESCs at select timepoints during in vitro differentiation into PGCLCs. Scale bar is 200um. d) Relative mRNA expression of select mESC ( Nanog), EpiLC ( Dnmt3b ), <t>PGCLC</t> ( Prdm1, Dppa3 ) and cohesin ( Stag1, 2, 3 and Smc1b ) genes from various timepoints during PGCLC differentiation in vitro . EB GFP+ cells were FACS sorted at the timepoints shown and collected for qRT-PCR. Gene expression is relative to levels in mESCs. Data is from 3 independent biological replicates. e) (Top) Representative brightfield and epi-fluorescent images of DPPA3-GFP mESCs treated with siLuc or siStag3 at three timepoints of embryoid body (EB) differentiation. (Bottom) Representative FACS profile of DPPA3-GFP d6 EB treated with siLuc or siStag3. Scale bar is 200μm. f) Left, quantification of DPPA3-GFP GeoMean or right, the % of DPPA3-GFP+ cells assessed by FACS (relative to UT mESCs) at different stages of PGCLC differentiation and upon siRNA treatment. Data is from 4 independent biological replicates. Quantifications and statistical analysis as before. g) Relative mRNA expression of select genes in mESCs or d6 EB GFP+ cells in siLuc and siStag3 conditions. Data is shown as fold-change from UT and is from 3 independent biological replicates. Quantifications and statistical analysis as above.
Medium, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Corning Life Sciences minimum essential medium nonessential amino acids
a) GSEA of Stag3 KD RNA-seq data reveals a negative normalised enrichment score of -1.50 (adj p= 0.044) for the Spermatogenesis signature (see Methods). b) Relative mRNA expression of PGC regulators in siLuc and siStag3 mESCs. Data is shown as fold-change from UT and is from 9 independent biological replicates. Quantifications and statistical analysis as before. c) Representative brightfield (top row), epi-fluorescent (middle row) and FACS profiles of PRDM1-GFP mESCs at select timepoints during in vitro differentiation into PGCLCs. Scale bar is 200um. d) Relative mRNA expression of select mESC ( Nanog), EpiLC ( Dnmt3b ), <t>PGCLC</t> ( Prdm1, Dppa3 ) and cohesin ( Stag1, 2, 3 and Smc1b ) genes from various timepoints during PGCLC differentiation in vitro . EB GFP+ cells were FACS sorted at the timepoints shown and collected for qRT-PCR. Gene expression is relative to levels in mESCs. Data is from 3 independent biological replicates. e) (Top) Representative brightfield and epi-fluorescent images of DPPA3-GFP mESCs treated with siLuc or siStag3 at three timepoints of embryoid body (EB) differentiation. (Bottom) Representative FACS profile of DPPA3-GFP d6 EB treated with siLuc or siStag3. Scale bar is 200μm. f) Left, quantification of DPPA3-GFP GeoMean or right, the % of DPPA3-GFP+ cells assessed by FACS (relative to UT mESCs) at different stages of PGCLC differentiation and upon siRNA treatment. Data is from 4 independent biological replicates. Quantifications and statistical analysis as before. g) Relative mRNA expression of select genes in mESCs or d6 EB GFP+ cells in siLuc and siStag3 conditions. Data is shown as fold-change from UT and is from 3 independent biological replicates. Quantifications and statistical analysis as above.
Minimum Essential Medium Nonessential Amino Acids, supplied by Corning Life Sciences, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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STEMCELL Technologies Inc neaa
a) GSEA of Stag3 KD RNA-seq data reveals a negative normalised enrichment score of -1.50 (adj p= 0.044) for the Spermatogenesis signature (see Methods). b) Relative mRNA expression of PGC regulators in siLuc and siStag3 mESCs. Data is shown as fold-change from UT and is from 9 independent biological replicates. Quantifications and statistical analysis as before. c) Representative brightfield (top row), epi-fluorescent (middle row) and FACS profiles of PRDM1-GFP mESCs at select timepoints during in vitro differentiation into PGCLCs. Scale bar is 200um. d) Relative mRNA expression of select mESC ( Nanog), EpiLC ( Dnmt3b ), <t>PGCLC</t> ( Prdm1, Dppa3 ) and cohesin ( Stag1, 2, 3 and Smc1b ) genes from various timepoints during PGCLC differentiation in vitro . EB GFP+ cells were FACS sorted at the timepoints shown and collected for qRT-PCR. Gene expression is relative to levels in mESCs. Data is from 3 independent biological replicates. e) (Top) Representative brightfield and epi-fluorescent images of DPPA3-GFP mESCs treated with siLuc or siStag3 at three timepoints of embryoid body (EB) differentiation. (Bottom) Representative FACS profile of DPPA3-GFP d6 EB treated with siLuc or siStag3. Scale bar is 200μm. f) Left, quantification of DPPA3-GFP GeoMean or right, the % of DPPA3-GFP+ cells assessed by FACS (relative to UT mESCs) at different stages of PGCLC differentiation and upon siRNA treatment. Data is from 4 independent biological replicates. Quantifications and statistical analysis as before. g) Relative mRNA expression of select genes in mESCs or d6 EB GFP+ cells in siLuc and siStag3 conditions. Data is shown as fold-change from UT and is from 3 independent biological replicates. Quantifications and statistical analysis as above.
Neaa, supplied by STEMCELL Technologies Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Image Search Results


a) GSEA of Stag3 KD RNA-seq data reveals a negative normalised enrichment score of -1.50 (adj p= 0.044) for the Spermatogenesis signature (see Methods). b) Relative mRNA expression of PGC regulators in siLuc and siStag3 mESCs. Data is shown as fold-change from UT and is from 9 independent biological replicates. Quantifications and statistical analysis as before. c) Representative brightfield (top row), epi-fluorescent (middle row) and FACS profiles of PRDM1-GFP mESCs at select timepoints during in vitro differentiation into PGCLCs. Scale bar is 200um. d) Relative mRNA expression of select mESC ( Nanog), EpiLC ( Dnmt3b ), PGCLC ( Prdm1, Dppa3 ) and cohesin ( Stag1, 2, 3 and Smc1b ) genes from various timepoints during PGCLC differentiation in vitro . EB GFP+ cells were FACS sorted at the timepoints shown and collected for qRT-PCR. Gene expression is relative to levels in mESCs. Data is from 3 independent biological replicates. e) (Top) Representative brightfield and epi-fluorescent images of DPPA3-GFP mESCs treated with siLuc or siStag3 at three timepoints of embryoid body (EB) differentiation. (Bottom) Representative FACS profile of DPPA3-GFP d6 EB treated with siLuc or siStag3. Scale bar is 200μm. f) Left, quantification of DPPA3-GFP GeoMean or right, the % of DPPA3-GFP+ cells assessed by FACS (relative to UT mESCs) at different stages of PGCLC differentiation and upon siRNA treatment. Data is from 4 independent biological replicates. Quantifications and statistical analysis as before. g) Relative mRNA expression of select genes in mESCs or d6 EB GFP+ cells in siLuc and siStag3 conditions. Data is shown as fold-change from UT and is from 3 independent biological replicates. Quantifications and statistical analysis as above.

Journal: bioRxiv

Article Title: STAG3 promotes exit from pluripotency through post-transcriptional mRNA regulation in the cytoplasm

doi: 10.1101/2024.05.31.595485

Figure Lengend Snippet: a) GSEA of Stag3 KD RNA-seq data reveals a negative normalised enrichment score of -1.50 (adj p= 0.044) for the Spermatogenesis signature (see Methods). b) Relative mRNA expression of PGC regulators in siLuc and siStag3 mESCs. Data is shown as fold-change from UT and is from 9 independent biological replicates. Quantifications and statistical analysis as before. c) Representative brightfield (top row), epi-fluorescent (middle row) and FACS profiles of PRDM1-GFP mESCs at select timepoints during in vitro differentiation into PGCLCs. Scale bar is 200um. d) Relative mRNA expression of select mESC ( Nanog), EpiLC ( Dnmt3b ), PGCLC ( Prdm1, Dppa3 ) and cohesin ( Stag1, 2, 3 and Smc1b ) genes from various timepoints during PGCLC differentiation in vitro . EB GFP+ cells were FACS sorted at the timepoints shown and collected for qRT-PCR. Gene expression is relative to levels in mESCs. Data is from 3 independent biological replicates. e) (Top) Representative brightfield and epi-fluorescent images of DPPA3-GFP mESCs treated with siLuc or siStag3 at three timepoints of embryoid body (EB) differentiation. (Bottom) Representative FACS profile of DPPA3-GFP d6 EB treated with siLuc or siStag3. Scale bar is 200μm. f) Left, quantification of DPPA3-GFP GeoMean or right, the % of DPPA3-GFP+ cells assessed by FACS (relative to UT mESCs) at different stages of PGCLC differentiation and upon siRNA treatment. Data is from 4 independent biological replicates. Quantifications and statistical analysis as before. g) Relative mRNA expression of select genes in mESCs or d6 EB GFP+ cells in siLuc and siStag3 conditions. Data is shown as fold-change from UT and is from 3 independent biological replicates. Quantifications and statistical analysis as above.

Article Snippet: At 48h post-EpiLC induction, cells were seeded at a density of 4x10 3 cells/well in 50μl Primordial germ cell-like cell (PGCLC) media (GMEM 15% KnockOut serum replacement, 1mM Sodium Pyruvate, 1X NEAA, 2mM Glutamax, 1X PenStrep, 50mM BMe) supplemented with human recombinant BMP4 (500ng/ml; Proteintech HZ-1045) and mouse recombinant LIF (1000U/ml).

Techniques: RNA Sequencing, Expressing, In Vitro, Quantitative RT-PCR, Gene Expression